Bioinformatics Core

The Bioinformatics Core at the Comprehensive Transplant Center is committed to exceptional care, pioneering research and the training of the next generation of transplant clinicians and investigators. The mission of the Bioinformatics Core is to provide state-of-the-art bioinformatics training and analytic support services to investigators interested in basic, pre-clinical, clinical and epidemiological transplant studies.

Services

Data Storage and Management
- Managing Raw Data from NUSeq/external sources
RNA Sequencing (Bulk or Single Cell)
- Quality Control, Alignment, Quantification, Differential Expression, Gene Set Enrichment Analysis
Spatial Transcriptomics
- Nanostring's GeoMX/CosMX platforms
- MerFISH or 10X Visium
Epigenomics
- ATAC-seq
- ChIP-seq
Metabolomics
- Comprehensive Profiling, Targeted, Metabolic Flux
HLA Typing from DNA Sequencing
Genome Wide Association Studies

We are always interested in collaborations and will attempt to accommodate any proposed project, large or small.

Starting a Project

For questions, please contact Connor Lantz, PhD.

To discuss starting a transplant-related project using the Bioinformatics Core of the Comprehensive Transplant Center, please complete the intake form.

Bioinformatics Intake Form

Bioinformatics Presentation

Download our presentation about the Bioinformatics Core at the Comprehensive Transplant Center and how we can support your research.